Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
model matrix
•
reset
0
votes
2
replies
1.1k
views
Model matrix for longitudinal pairwise rna-seq data: linear regression or linear mixed model?
limma
model matrix
linear regression
4.9 years ago
agm
• 0
1
vote
2
replies
1.4k
views
DESeq2 design & model matrix not full rank - am I nesting correctly?
deseq2
model matrix
experimental design
multiple factor design
updated 6.3 years ago by
Michael Love
42k • written 6.3 years ago by
amye107
• 0
0
votes
7
replies
1.4k
views
Model matrix not full rank
deseq2
linear combination
model matrix
updated 6.6 years ago by
Michael Love
42k • written 6.6 years ago by
sally_b86
• 0
2
votes
4
replies
1.2k
views
Removing batch effect on edgeR when interactons are looked at
rnaseq
edger
statistics
model matrix
updated 6.6 years ago by
Steve Lianoglou
★ 13k • written 6.6 years ago by
David R
▴ 90
3
votes
6
replies
28k
views
Designing a contrast in DESEQ
deseq2
design and contrast matrix
model matrix
7.2 years ago
mrigaya.mehra
▴ 10
0
votes
8
replies
1.8k
views
DESeq2 glibc error
deseq2
differential gene expression
model matrix
updated 7.3 years ago by
Michael Love
42k • written 7.3 years ago by
gregory.l.stone
▴ 10
4
votes
6
replies
2.5k
views
Find if a covariate has effect on gene expression level using edgeR and DESeq2
edger
deseq2
model matrix
differential expression
7.7 years ago
ta65
• 0
2
votes
7
replies
3.1k
views
ballgown custom models
ballgown
linear model
model matrix
custom model
8.2 years ago • updated 8.1 years ago
sbcn
▴ 80
7
votes
6
replies
4.0k
views
Design and contrast question limma (additive or nested or duplicateCorrelation())??
limma
model matrix
limma design matrix
complex-design
updated 8.9 years ago by
Aaron Lun
★ 28k • written 8.9 years ago by
Guido Hooiveld
★ 4.0k
9
votes
2
replies
5.4k
views
Limma Model Matrix Understanding
limma
limma design matrix
model matrix
updated 9.0 years ago by
Aaron Lun
★ 28k • written 9.0 years ago by
andrew.j.skelton73
▴ 370
2
votes
5
replies
3.8k
views
design model matrix for nested factors (edgeR)
edger
design matrix
model matrix
updated 9.1 years ago by
Aaron Lun
★ 28k • written 9.1 years ago by
silvia.paolucci81
• 0
11 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
makala
• 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
Erik Wright
▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
by
Matthew Thornton
▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
Awards
• All
Popular Question
to
Chris
▴ 10
Popular Question
to
Guido Hooiveld
★ 4.0k
Scholar
to
Michael Love
42k
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
boczniak767
▴ 720
Locations
• All
Hong Kong,
22 minutes ago
WEHI, Melbourne, Australia,
35 minutes ago
Hong Kong,
58 minutes ago
United States,
1 hour ago
Melbourne, Australia,
1 hour ago
Traffic: 383 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6